rs226534805 SNP Detail

Summary

• ID
  rs226534805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181222744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTCCAC TTTGCATATC
  GACATGAAAG CCAATGGCGG TGCTGGCTAA GGTCAGACAA CTCCAAGGAA AAGGCCTCAG
  GGGCAGGCAG ATAGGGAGCC AGGTGCTGGG AAAGGCAATA GGAGAAACCT CAAGCTGGGC
  TTTAGTCTAC CAGCGACTCC CTCCCCTACT GCTGCCAGTG CCTGAGGCAC CAGGGCAGTT
  Y
  GTATCTTCTC AAGGTGTATC CCCAGGAACC TTCGGAGGAG GAATTTGGCC ACGGCCTCAC
  AAAGTCTGAC TCCTGGTCAG AATGCCTGGA GTGTGTGAAC TAGCTGGGAT TCACCTCATC
  CACTGCCAGC ACCTCACTTT CTAAAGGCGT CCGGGGTTAC AGCTTCTCAG GCGGTGCACT
  GTGGCATGCA AAGCCGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356781065	MGP_WTSI_2_181315656	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226534805					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356781065	MGP_WTSI_2_181315656	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181222744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	143 bp proximal
Rr397593	regulatory region 397593	135 bp upstream
Tssr22326	transcription start site region 22326	1612 bp downstream
Tssr22327	transcription start site region 22327	1584 bp downstream
Tssr22328	transcription start site region 22328	1426 bp downstream
Tssr22329	transcription start site region 22329	1398 bp downstream
Tssr22330	transcription start site region 22330	1384 bp downstream
Tssr28213	transcription start site region 28213	179 bp downstream
Tssr28214	transcription start site region 28214	949 bp downstream
Tssr28215	transcription start site region 28215	1023 bp downstream
Tssr28216	transcription start site region 28216	1045 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates
Zfp512b	zinc finger protein 512B	1181 bp downstream