rs226536197 SNP Detail

Summary

• ID
  rs226536197
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72156068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCTGTG TTTTCAAAGC
  TGCCCTGCCT TCCTGTACCC CAAGGAGAGC AAATTAAAGC CACCAGGAGG TGCCATGTTC
  TCAGCACTTA TCAGATGGGC CAGTGTCTTA GTTAGGGTTT TACTGCTGTG AACAGACATC
  ATGATCAAGG CAAGTCTTAT AAGGACAACA TTTAATTGGG GCAGGCTTAC AGGTTCAGAG
  K
  TTCAGTCCAT TACCATCAAG GTGGGAGCAT GGCAGCAGCA TCCAGGCAGG CATGGTGCAG
  GAGGAGCTGA GAGTTCTGCA TCTTCATCTG AAGGCTGTTA GGAGAACACT GACTTCCAGG
  CAGCTAGGAC AAGGGTCTTA AAGCCTAGGC CCACAGTGAC ACACCCACTC CAACAAGGCC
  ACACCTCCTA ATACTGCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375119786	MGP_WTSI_8_74227323	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226536197					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375119786	MGP_WTSI_8_74227323	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72156068 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	1635 bp upstream
Cpgi20570	CpG island 20570	1588 bp distal
Gm18860	predicted gene, 18860	781 bp downstream
Rr665157	regulatory region 665157	1646 bp distal
Rr665158	regulatory region 665158	1145 bp distal
Rr665159	regulatory region 665159	1432 bp distal
Rr665160	regulatory region 665160	1214 bp distal
Rr665161	regulatory region 665161	124 bp distal
Rr665162	regulatory region 665162	within coordinates
Tssr81749	transcription start site region 81749	1670 bp upstream
Tssr81750	transcription start site region 81750	1640 bp upstream
Tssr81751	transcription start site region 81751	1583 bp upstream
Tssr81752	transcription start site region 81752	790 bp upstream