rs226536563 SNP Detail

Summary

• ID
  rs226536563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91051349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCCCCC CCCCCCCACG
  GCCCCAAGTC GGGTAGAAGG ATATGACACA AAATGTGATT TACTCGTGCT CAGTACACCG
  CAGGAACAAT GCACTCTTGT GTACAGCCTG AGATGACTAA ATTTCAACGG TGTACTTACG
  CAGACGTAAA TAAATCTTCA TCTAGTACTA TCTATGAGTA TGTAACTAAT AGAGAAGCAA
  Y
  CCCCCATCCC CCGCGCGTTC ACGCTTGAAC ACACACACAC CTTAATTTCT TCAGTCCTAA
  TGACTAAAGT TCCCCAAACT GTTAGGTCTC CACTGATGAC ATAGCTCAGT AACCACTGTC
  CTCTAGCAGG TGGTCACTTC AGCGCAGACA TCACTTCCTT CCTTTTGAGG ATTTGGGGAA
  GGACATCCCA GGGTCCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847479	MGP_WTSI_5_91332516	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226536563					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847479	MGP_WTSI_5_91332516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91051349 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	409 bp upstream
Gm73232	predicted gene, 73232	286 bp upstream
Rr614420	regulatory region 614420	297 bp distal
Rr614421	regulatory region 614421	428 bp distal
Rr614422	regulatory region 614422	within coordinates
Tssr47224	transcription start site region 47224	197 bp upstream
Tssr47225	transcription start site region 47225	319 bp upstream
Tssr47226	transcription start site region 47226	374 bp upstream
Tssr47227	transcription start site region 47227	579 bp upstream
Tssr47228	transcription start site region 47228	622 bp upstream
Tssr47229	transcription start site region 47229	649 bp upstream
Tssr47230	transcription start site region 47230	674 bp upstream
Tssr47231	transcription start site region 47231	694 bp upstream
Tssr47232	transcription start site region 47232	859 bp upstream
Tssr47233	transcription start site region 47233	876 bp upstream
Tssr47234	transcription start site region 47234	948 bp upstream
Tssr47235	transcription start site region 47235	1698 bp upstream
Tssr47236	transcription start site region 47236	1718 bp upstream
Tssr47237	transcription start site region 47237	1767 bp upstream
Tssr47238	transcription start site region 47238	1773 bp upstream
Tssr47239	transcription start site region 47239	1833 bp upstream
Tssr47240	transcription start site region 47240	1845 bp upstream
Tssr47241	transcription start site region 47241	1860 bp upstream
Tssr47242	transcription start site region 47242	1897 bp upstream
Tssr47243	transcription start site region 47243	1920 bp upstream
Tssr47244	transcription start site region 47244	1954 bp upstream
Tssr47245	transcription start site region 47245	1974 bp upstream
Tssr51810	transcription start site region 51810	347 bp upstream
Tssr51811	transcription start site region 51811	293 bp upstream
Tssr51812	transcription start site region 51812	711 bp downstream
Tssr51813	transcription start site region 51813	743 bp downstream
Tssr51814	transcription start site region 51814	1717 bp downstream
Tssr51815	transcription start site region 51815	1751 bp downstream
Tssr51816	transcription start site region 51816	1785 bp downstream