rs226541960 SNP Detail

Summary

• ID
  rs226541960
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110192218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGAAACA ACTAAGAACA
  TGGTAAATAA ATAAGAGCGA AAGGAGAATC AATGAACTTC CTTGTCTGGC AGGCATGCCA
  CACACCTGGG ACCTCATCTG AAAATCAGGC ATCTCAGCCT TCAGAGACCA AAGAGAAGCC
  TGCTGATGCA AAGGAGCCAC GCACCTCGTC CCCCGCCAGG ATGTGGAAGT TTAATCAGTC
  T
  TTCCACACAA ATGCATCCTT TAGATGGAGT CGAAAGAAGA GATTCTGTTA GAGCAATAAA
  ACCCTTTAGG AAATAACCCA GGGGTTAGTT TAAAATTGCT TTTTTTTGCA AGTGAAAAAT
  CCTTAATAAT AACATAAATA ATGCACAAAA CCAAACTAAA ATCAGAATAA CTCAACTTAT
  TAAAATTTTT CTTTCTTTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355239500	MGP_WTSI_2_110202030	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226541960					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355239500	MGP_WTSI_2_110202030	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110192218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12041	CpG island 12041	740 bp proximal
Fibin	fin bud initiation factor homolog (zebrafish)	within coordinates
Gm30319	predicted gene, 30319	within coordinates
Rr55365	regulatory region 55365	within coordinates
Tssr25605	transcription start site region 25605	1031 bp downstream
Tssr25606	transcription start site region 25606	1082 bp downstream
Tssr25607	transcription start site region 25607	1112 bp downstream
Tssr25608	transcription start site region 25608	1219 bp downstream
Tssr25609	transcription start site region 25609	1242 bp downstream
Tssr25610	transcription start site region 25610	1262 bp downstream
Tssr25611	transcription start site region 25611	1284 bp downstream