rs226547857 SNP Detail

Summary

• ID
  rs226547857
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107465847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGACCT GTTGCATTAA
  ACAAACAACT GCTGAAAAAG AGTGCCTGCC CAGCATATTT TTGACCTGAC AGCCACTTTA
  ATGTGGCTTG GGTCTCGGGG CATTTAATAG GGTGGTGACA GTTCCACAAG AACTAGTACT
  GAAAGCATAT ACTTACCGAG AGTGGTCTTA GAATTATGGC AGGCCCTGTG AGGGGAGCTT
  S
  TGAGACGGTA AAGAATCTGG CGCAAGGGCC CAGCAGCCAA AGGGACCACA ATACAGTGCG
  GCAGATGAGA CCGTCCGGGC AGTTTTGACA AGTAGGATAG TAAGAGAAGA GGTGAACAGA
  AATCAACGTG TGGGCTGAAC GTTTTTTTAC AAGCAAGTAA TGTTAGTGGT CCCTAAGGTG
  TAAGGACTCC TACTGGGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378851176	MGP_WTSI_9_107490979	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226547857					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378851176	MGP_WTSI_9_107490979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107465847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	360 bp distal
Gm16343	predicted gene 16343	1180 bp upstream
Gm68835	predicted gene, 68835	within coordinates
Hyal3	hyaluronoglucosaminidase 3	1289 bp downstream
Ifrd2	interferon-related developmental regulator 2	within coordinates
Rr401663	regulatory region 401663	1010 bp downstream
Rr686552	regulatory region 686552	996 bp distal
Rr686553	regulatory region 686553	2 bp distal
Rr686554	regulatory region 686554	within coordinates
Rr686555	regulatory region 686555	1636 bp proximal
Tssr87008	transcription start site region 87008	992 bp downstream
Tssr87009	transcription start site region 87009	968 bp downstream
Tssr87010	transcription start site region 87010	902 bp downstream
Tssr87011	transcription start site region 87011	847 bp downstream
Tssr87012	transcription start site region 87012	759 bp downstream