rs226553259 SNP Detail

Summary

• ID
  rs226553259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175460153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTAAAT ATATTTGCTA
  TAAATATGGT ATTGCTTTTC ACTACAGTTA TTAATACACA CTGATCGCTG ACATTTCTAT
  GAATACCATG TCCAGTACTG ATTATGTCTC TCTACCCTTC CACACTCTTC CGTCTCCCAC
  ATCTCCTCAG TCTCTCTTAA AATTTTAGGT CTTCTTTCTT CTTCTTCTCT CCCTCTCTTA
  Y
  CTCTCCCCAC CCCATGTATG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG CGCGCGCGCG
  CGCGCGCGCG AGTAATTTCC ATACGTGACA GAAAATATGC AGAACTTGTC TTATGTATTT
  ATATCTCACT TATCCCAATG TCCTCCAAAT CCACTCATTC TTACTGAGAT GACCTAAGAC
  ACATTTTTGT TTTTAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352481925	MGP_WTSI_1_177562718	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226553259					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352481925	MGP_WTSI_1_177562718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175460153 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	within coordinates
Rr396618	regulatory region 396618	468 bp downstream
Tssr10313	transcription start site region 10313	609 bp downstream
Tssr10314	transcription start site region 10314	586 bp downstream
Tssr10315	transcription start site region 10315	563 bp downstream
Tssr10316	transcription start site region 10316	530 bp downstream
Tssr10317	transcription start site region 10317	493 bp downstream
Tssr10318	transcription start site region 10318	486 bp downstream
Tssr10319	transcription start site region 10319	476 bp downstream
Tssr10320	transcription start site region 10320	454 bp downstream
Tssr10321	transcription start site region 10321	436 bp downstream
Tssr10322	transcription start site region 10322	427 bp downstream
Tssr10323	transcription start site region 10323	402 bp downstream