rs226557430 SNP Detail

Summary

• ID
  rs226557430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57720599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTCCGG CGGCGTTGGC
  CTGGTCTCAC TGGTTTAGCT CCAGCGCCCA GACTTGCTGA GGCCAGCCGG TGCGCCCTTT
  AATCCTCTTC TCGCCGGGCC CCGAGGCAGG AGGGAAGCTT TCGGGCTGCT GAGGCTGTCA
  ATGGACACAA ACAAACAAAC AGAAGGCGAG AAAGTCAGGT TTAAGTTATT CAGTTCGGTC
  Y
  CGCCGGCTTG GAGGGGAGTT TGGGGAACGG GTTGGGAGCA GTAACTGGGC GTCCTTAACT
  AAGTGACAGA TGTCTGTTTG TTGAACCACA CAATCAGGAT TATAAATCTG CCTTTATGCT
  CTGAGTTCCT GGGGTCCGGG ATGGTCTGAC CAGCTTGGAG AGGTTTACTA TTGAGAATTA
  GACAAGTCTG GGTAAACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383506451	MGP_WTSI_11_57643275	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226557430					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383506451	MGP_WTSI_11_57643275	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57720599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	1413 bp distal
Cpgi2911	CpG island 2911	31 bp distal
Cpgi2912	CpG island 2912	1462 bp proximal
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447812	regulatory region 447812	1256 bp distal
Rr447813	regulatory region 447813	289 bp distal
Rr447814	regulatory region 447814	within coordinates
Tssr3506	transcription start site region 3506	502 bp upstream
Tssr101646	transcription start site region 101646	1913 bp upstream
Tssr101647	transcription start site region 101647	1921 bp upstream
Tssr101648	transcription start site region 101648	1934 bp upstream
Tssr108123	transcription start site region 108123	810 bp upstream
Tssr108124	transcription start site region 108124	753 bp upstream
Tssr108125	transcription start site region 108125	708 bp upstream
Tssr108126	transcription start site region 108126	527 bp upstream
Tssr108127	transcription start site region 108127	460 bp upstream
Tssr108128	transcription start site region 108128	448 bp upstream
Tssr108129	transcription start site region 108129	313 bp upstream
Tssr108130	transcription start site region 108130	1990 bp downstream