rs226559357 SNP Detail

Summary

• ID
  rs226559357
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64995996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGCCTG CAGCCGACCC
  CCGGCAGGAC CCCGACCCGG GCAGCCCGCC CTCCTCACCG CCAGCGACTG CGCTCCAGCT
  GCCGACCATC CCGGCCCGGC TCTGTTTACA AGCGGCTTCT CGCGGTCCCA CGCCCAAAAG
  CTTCCCCGCG GCAGCCCGGC AACAGGATCC GATTACACAG AGTTCCAGCC GGTGAGGACC
  S
  GTCCCTCCTA CGGGAGGAGC AGGCGGTCGG GCGGGGCCTG ACCTCCTTAT CTTATTGTTT
  GCTTTACAGC CTTTATCCCA GGCTTGGTCC CTTCCACGTT CTTCCCAAGA CCGAGGATGT
  TTGCAGTTAA AACTGTCACT TGGAACCTAC CAGGGCAGGG CCAGCTAGCA GCAGTTGCTA
  AGAATAAGAG AATTTCTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349895493	MGP_WTSI_1_65003411	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226559357					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349895493	MGP_WTSI_1_65003411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64995996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	within coordinates
Gm51627	predicted gene, 51627	within coordinates
Plekhm3	pleckstrin homology domain containing, family M, member 3	13 bp upstream
Rr412356	regulatory region 412356	325 bp distal
Rr412357	regulatory region 412357	24 bp distal
Rr412358	regulatory region 412358	71 bp distal
Rr412359	regulatory region 412359	within coordinates
Tssr11945	transcription start site region 11945	112 bp upstream
Tssr11946	transcription start site region 11946	55 bp upstream
Tssr11947	transcription start site region 11947	19 bp upstream
Tssr11948	transcription start site region 11948	2 bp upstream