rs226563762 SNP Detail

Summary

• ID
  rs226563762
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101828511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGCCCA CAGGGGCCCA
  AATTACAATC GGAGCCCACA CAAATAGCCG CCGGGCTTGG CCTGCCGGGG GGGGGGGGGC
  GTGGGGTGTG TGAGGAGGAG CTGGATGCCA CTCGAGGTGG AAATGGGGGG AGGGGCGGAG
  GGGTGGGGTC GCGCGGGTCC TTCGGGCTTG CTAGGAACCC AAGTTCAGTC CTGCGTCCTG
  M
  AGTGTGACCC TCCTGATACC CCATGGGGAC TGCTTGGGTT CCTCCCACCC ACACCCACCC
  CCGGTGCAAT GCTGAGAACC TTACCTGTGG ATTCTCCTTG ATTAACCCCC CTGGCCATGC
  CTTTTTCTTA GCATTTTGGT AGAAACAGAC CTCCGTTCCA TCTTCCCTTC TTTAAGTCGC
  ATCTGATTAT TCAGAACCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323834279	CHEV_11_101798999	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226563762					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101828511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3890	CpG island 3890	24 bp distal
Gm33662	predicted gene, 33662	within coordinates
Gm74450	predicted gene, 74450	within coordinates
Rpl27-ps2	ribosomal protein L27, pseudogene 2	1816 bp upstream
Rr457131	regulatory region 457131	within coordinates
Rr457132	regulatory region 457132	272 bp proximal
Tssr105164	transcription start site region 105164	1000 bp downstream