rs226564097 SNP Detail

Summary

• ID
  rs226564097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77778288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAATTGG CTTACAACAG
  AGGTTTATTC CATTATTGTG ATGGTGGAAT TCATGGTGGG GAGTTTTATG GCATCTAAGT
  AGTAGGGGGG CTAGAGAAGG AGTTGAGAAT TCTATATCTA GATCCACAGA CAGCAGGAGA
  AGACGTTCAA ACACTGGCCA GGCGTGGGCA TCTGAGAAGC CCACCTCAGT GACACACTTC
  Y
  TTCCACTGCA CCAAGTCTAC CTCAACAAAG CCACACCTCC TAATTCCTGT GAGTCTATGT
  GGGCCATTTT TATTCAAACC CCCACAGGGT GTAAACAAAA TAAAAATCCT GGGCTAGGCA
  CTTTAATCCC ATAATTTAAG AGGCAGACCT GTGTTCAAGT GTTCAAGGCC AGCCTGATCT
  ATATAGTCAG TTCTCAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss354556413	MGP_WTSI_2_77786001	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs226564097					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354556413	MGP_WTSI_2_77786001	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77778288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	1469 bp distal
Cwc22	CWC22 spliceosome-associated protein	1569 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	1360 bp downstream
Rr559852	regulatory region 559852	1820 bp distal
Rr559853	regulatory region 559853	1079 bp distal
Tssr24874	transcription start site region 24874	1745 bp upstream
Tssr24875	transcription start site region 24875	1617 bp upstream
Tssr24876	transcription start site region 24876	1571 bp upstream
Tssr24877	transcription start site region 24877	1552 bp upstream