rs226564124 SNP Detail

Summary

• ID
  rs226564124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCCGGCCCGA CCCAGGACAC CTCTCTAGGG ACGCTACTGT CACCCCTCAG
  Y
  CAAGGCTCCC ATCAAATTGA CCCCACTTTG GGCTTCTATC ACCACGCAGG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322135228	CHEV_7_31339915	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226564124					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18809	CpG island 18809			1362 bp distal
Cpgi18810	CpG island 18810			299 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6			mRNA-UTR
				Noncoding-Transcript-Variant
Lin37	lin-37 DREAM MuvB core complex component			545 bp downstream
Mir9769	microRNA 9769			1992 bp downstream
Rr644849	regulatory region 644849			1618 bp distal
Rr644850	regulatory region 644850			1395 bp distal
Tssr65780	transcription start site region 65780			1624 bp downstream
Tssr65781	transcription start site region 65781			1587 bp downstream
Tssr65782	transcription start site region 65782			102 bp downstream
Tssr65783	transcription start site region 65783			36 bp downstream
Tssr65784	transcription start site region 65784			12 bp downstream
Tssr65785	transcription start site region 65785			27 bp upstream
Tssr65786	transcription start site region 65786			45 bp upstream
Tssr65787	transcription start site region 65787			139 bp upstream
Tssr71789	transcription start site region 71789			208 bp upstream
Tssr71790	transcription start site region 71790			66 bp upstream