rs226565377 SNP Detail

Summary

• ID
  rs226565377
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCAGCC TTTTTCTAGC
  ACGTCTAACA TACTCTCCTA CAGGGGCACT ATCGGGTGGT GTTTCCTTCC AGTCCCTACC
  CAAAGAAATG CCATTTGTGT TCTCATCAGA AATTGGAAAA ACCAATAAAT CTTCATTGAT
  GCTCTTATTT TATTTTAATC ACAATACGAT CTAGAAAAGA AGCACAACTC ACGAATAGGC
  T
  CCCAAACCAA GCACTATACG TTTCAAATGA AGTAGAGATG TCAAAGTGAT GAGACACCCT
  CAAACCACAC ATTTGAGTAG AGATGCAGGG TGTTCACCAT CTTGCCCATG GCAAAGCATG
  AGCTAGATTC TAAAGTCCTA GGCAAGAAAA AAACAAACAA AGCAAAACTC TGGTCAGTCT
  AGTTACACCT CTAGAAATCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320151883	CHEV_1_177561634	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226565377					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459069 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	690 bp upstream
Rr396618	regulatory region 396618	315 bp upstream
Tssr10313	transcription start site region 10313	465 bp upstream
Tssr10314	transcription start site region 10314	493 bp upstream
Tssr10315	transcription start site region 10315	512 bp upstream
Tssr10316	transcription start site region 10316	541 bp upstream
Tssr10317	transcription start site region 10317	561 bp upstream
Tssr10318	transcription start site region 10318	593 bp upstream
Tssr10319	transcription start site region 10319	601 bp upstream
Tssr10320	transcription start site region 10320	617 bp upstream
Tssr10321	transcription start site region 10321	638 bp upstream
Tssr10322	transcription start site region 10322	652 bp upstream
Tssr10323	transcription start site region 10323	666 bp upstream