rs226566304 SNP Detail

Summary

• ID
  rs226566304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCACCA ATCTCTGAGC
  TCTCCAAGCT CAGGACTTGA AATCCCACCA ATCCTCAACC TGGAAATCTC TGCCCTGAAA
  AGCTCCATCC ATAAGAAATC CTATATAAGC CCTGCCCTTT GTTCAACAGC CTTGCTGTCT
  GCTCCTGGAA GCAGAGGCAG CCACTCCTGG ATTTGTCCCC TCTCTCCCTG GACCCTCCCT
  R
  TTTTGTTTTT TTTTTTGTTT TTGTTTTTTT TTAAATGAGA TTTGATTCCT GATGTGATGT
  TTTTGTTTTT GTTTTTGTTT TTTAGCATCA GAAGAAGCAA AGAAGCAATG AAGAGAAGTG
  GAGCGGGGCT GAGGCTCCAG AGCTCAGCTG GGTATACCCT TCCCTGGGAG CTGCAGTGCC
  TCTTGCTGAG GAGGCTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss368223984	MGP_WTSI_6_48503475	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs226566304					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368223984	MGP_WTSI_6_48503475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	981 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	528 bp downstream
Lrrc61	leucine rich repeat containing 61	1322 bp upstream
Rr399635	regulatory region 399635	1042 bp upstream
Rr629686	regulatory region 629686	258 bp distal
Rr629687	regulatory region 629687	160 bp proximal
Rr629688	regulatory region 629688	1287 bp proximal
Rr629689	regulatory region 629689	1340 bp proximal
Tssr56137	transcription start site region 56137	1300 bp upstream
Tssr56138	transcription start site region 56138	1454 bp upstream
Tssr60734	transcription start site region 60734	1181 bp downstream
Tssr60735	transcription start site region 60735	1198 bp downstream
Tssr60736	transcription start site region 60736	1241 bp downstream