rs226567122 SNP Detail

Summary

• ID
  rs226567122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126816213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTACTG AGCTTTCTCC
  AGCCTCCCCA ACCAGTCCAC CCCCAGGGTG CTCTCCAGAC CCTCGGCCAA AGGGTGAGAT
  GAAGTAGAGG CAGCAATGGA CTCTGGAATC CTGGATGTTC TTCCTGTTCA AGCCACTCTC
  ATCCCTGAGG TATTGCTCAA ACTGCTCCTC AATGAAGCGA ACCACAGGCA GCCAGCTGGT
  R
  TGTGGGAAGG AGATAGATAG TCCGAGATCA CAGGCCAGGG GACAAGATGA AGCTAACCAG
  GACTGTGCAG TCCCAAGTCA TTTCTTTGCT CCTAACCAAA GCCATCAGGG ACAGCTGGCC
  ACAGTACATG AGACATCAGA ATGTGGTGGC TGCACACCTG TAATCTCAGC ACTCAGGAAG
  CTGAGGCAGG AGGATTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083337	MGP_WTSI_7_134360555	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226567122					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083337	MGP_WTSI_7_134360555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126816213 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19732	CpG island 19732			1557 bp distal
Gm71806	predicted gene, 71806			1458 bp upstream
Rr368445	regulatory region 368445			976 bp upstream
Rr655747	regulatory region 655747			1580 bp distal
Rr655748	regulatory region 655748			1252 bp proximal
Rr655749	regulatory region 655749			1485 bp proximal
Septin1	septin 1			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Tssr2404	transcription start site region 2404			1471 bp upstream
Tssr74963	transcription start site region 74963			1971 bp upstream
Tssr74964	transcription start site region 74964			1938 bp upstream
Tssr74965	transcription start site region 74965			1692 bp upstream
Tssr74966	transcription start site region 74966			1598 bp upstream
Tssr74967	transcription start site region 74967			1346 bp upstream
Tssr74968	transcription start site region 74968			968 bp downstream
Tssr74969	transcription start site region 74969			1330 bp downstream
Tssr74970	transcription start site region 74970			1357 bp downstream
Tssr74971	transcription start site region 74971			1426 bp downstream
Tssr74972	transcription start site region 74972			1690 bp downstream
Tssr74973	transcription start site region 74973			1796 bp downstream