rs226572876 SNP Detail

Summary

• ID
  rs226572876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCGTAAC TAAAAAAACA
  AAAAGTTAAG GTGAAAAGTT CTGTGTTCCT CTGAGCTTTT AAGTCTCACT TTAACAGGAG
  TCATTTAAAA ATAAAATAGT TTTTCTCTGT TATTCCCATT CTGTCATCAA AATAGAAACA
  ATAGATGCCG TTTGTCATTC CAGCGTAGTC AATCCAGAAG CCAGCGAAGG CTAATACTGA
  R
  TGTGTAGAAT GAGTTCTTCC ATATCTAGGT TATCGGCAGG CTCCACTAAC TCTGATACCT
  GTAAGGAAGA AGTTGGGAAG CAGCACGGGA CCTTTCTCAT ACTGTTCCCT CAGTGCCAGA
  AGGTCTGGCA TTTCAAGCGT GTTTTCTTCC CTTTTAACAC ATTTAAAACT TTCAAAAACA
  ATTCAGCTGT AAAGAAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397140872	MGP_WTSI_16_84776217	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226572876					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397140872	MGP_WTSI_16_84776217	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	740 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Tssr139181	transcription start site region 139181	1879 bp downstream
Tssr139182	transcription start site region 139182	1827 bp downstream
Tssr139183	transcription start site region 139183	1798 bp downstream
Tssr139184	transcription start site region 139184	1775 bp downstream
Tssr139185	transcription start site region 139185	1734 bp downstream
Tssr139186	transcription start site region 139186	1678 bp downstream
Tssr139187	transcription start site region 139187	1658 bp downstream
Tssr139188	transcription start site region 139188	1640 bp downstream
Tssr139189	transcription start site region 139189	1549 bp downstream
Tssr139190	transcription start site region 139190	1533 bp downstream