About   Help   FAQ
rs226579634 SNP Detail
Summary
  • ID
    rs226579634
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:113879619 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCTCAGTCTC ATCCTCTACT
GTGAGGTAAA CTCGGTGTAA CAGCCTCATT TTTCACTAGA GCGCCTTGGT CTTTCTCCTT
ACTGAGGTAT CAGGAGGTGA GACTGAGCTG AGTAAGATGG CAGATGCTGA CTCGAGACCC
CTGCCATGCT TCTAAGTGAA ATGGGTATTA CTCTGGGTGA TTGCAGAATT TCTAGAGAAG
Y
TGAGGCTCAG CACCAAAAGC CATCCCTTAC CAATGAAAGA GGGCTGGAAG AGAGTCTCTG
GACAGCGGAA GCGCTCGTTG CCAATGGTGA TGACCTGGCC GTCAGGAAGT TCATAGCTCT
TCTCCAGAGA GGAGGAAGAT GCAGCTGTGG CCATCTCGTT CTCAAAATCC AGGGCGACGT
AACACAGTTT TTCTTTTATG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss355315555 MGP_WTSI_2_113874874 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226579634 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss355315555 MGP_WTSI_2_113874874 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:113879619 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Actc1 actin, alpha, cardiac muscle 1 within coordinates
Tssr600 transcription start site region 600 1569 bp upstream
Tssr601 transcription start site region 601 1558 bp upstream
Tssr602 transcription start site region 602 1339 bp downstream
Tssr19429 transcription start site region 19429 1841 bp downstream
Tssr19430 transcription start site region 19430 1731 bp downstream
Tssr19431 transcription start site region 19431 1647 bp downstream
Tssr19432 transcription start site region 19432 1564 bp downstream
Tssr19433 transcription start site region 19433 974 bp downstream
Tssr19434 transcription start site region 19434 930 bp downstream
Tssr19435 transcription start site region 19435 31 bp upstream
Tssr19436 transcription start site region 19436 412 bp upstream
Tssr19437 transcription start site region 19437 1147 bp upstream
Tssr19438 transcription start site region 19438 1230 bp upstream
Tssr19439 transcription start site region 19439 1295 bp upstream
Tssr25660 transcription start site region 25660 1820 bp upstream
Tssr25661 transcription start site region 25661 1799 bp upstream
Tssr25662 transcription start site region 25662 1696 bp upstream
Tssr25663 transcription start site region 25663 1670 bp upstream
Tssr25664 transcription start site region 25664 1629 bp upstream
Tssr25665 transcription start site region 25665 1521 bp upstream
Tssr25666 transcription start site region 25666 967 bp upstream
Tssr25667 transcription start site region 25667 924 bp upstream
Tssr25668 transcription start site region 25668 897 bp upstream
Tssr25669 transcription start site region 25669 834 bp upstream
Tssr25670 transcription start site region 25670 63 bp downstream
Tssr25671 transcription start site region 25671 106 bp downstream
Tssr25672 transcription start site region 25672 175 bp downstream
Tssr25673 transcription start site region 25673 210 bp downstream
Tssr25674 transcription start site region 25674 414 bp downstream
Tssr25675 transcription start site region 25675 462 bp downstream
Tssr25676 transcription start site region 25676 499 bp downstream
Tssr25677 transcription start site region 25677 526 bp downstream
Tssr25678 transcription start site region 25678 1198 bp downstream
Tssr25679 transcription start site region 25679 1207 bp downstream
Tssr25680 transcription start site region 25680 1220 bp downstream
Tssr25681 transcription start site region 25681 1267 bp downstream
Tssr25682 transcription start site region 25682 1349 bp downstream
Tssr25683 transcription start site region 25683 1356 bp downstream
Tssr25684 transcription start site region 25684 1447 bp downstream
Tssr25685 transcription start site region 25685 1817 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory