rs226580439 SNP Detail

Summary

• ID
  rs226580439
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28851401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGG TTTTTTTTGT TTGTTTGTTT
  K
  TTTTTTTAAC CGTCTTTTGC CTTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm
ss921225049	MGP_WTSI_12_28801402	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	T	G	G	T	G	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm
rs226580439					SNP	G	G	G	G	G	T	G	G	T	G	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921225049	MGP_WTSI_12_28801402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28851401 () rs orientation: forward

Symbol	Name	Function Class
Eipr1	EARP complex and GARP complex interacting protein 1	within coordinates
Rr464343	regulatory region 464343	604 bp distal
Rr464344	regulatory region 464344	1540 bp proximal
Tssr3815	transcription start site region 3815	693 bp downstream
Tssr113054	transcription start site region 113054	819 bp upstream