rs226585660 SNP Detail

Summary

• ID
  rs226585660
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80564716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAGCCC GGTTTTTTGT
  TTGTTTGTAT TGATTCTTTT TTTTTTTTTT TTTTTTTTTT TTTTGAGATA GGGTCTATTT
  ATGTAGCCTT GGCTGTCCTA GAATGTGCTA TGAAAACCAG ACTGGCTTCA AACTTGTAGC
  AATCTGGCTG CCTCTGCCTC CCTAAAGCTG GGGTTCAAGG CAGCCCTCTT CTGCTGTTCA
  M
  TTGTGTGGTG TTGGCTGAAG TGTCTCCCTC TGCTTTTGCT CTTTCTTTAA AACTGGAATA
  ATAACAGCAC GTTTTTTGGG ATTATTGTGA GAACAGTTTC AGTAGGTATG GAGGTGACAA
  GTGAGTGCCA GACAGGAATG TCTCTGAATG CTTTGCTTGC AATAATATCT GCAAACATTC
  ATCATTAAAG ATTAAAAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323024889	CHEV_9_80576270	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226585660					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80564716 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	415 bp distal
Rr683773	regulatory region 683773	337 bp proximal
Tssr86335	transcription start site region 86335	750 bp downstream