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rs226585895 SNP Detail
Summary
  • ID
    rs226585895
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94841671 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTCCACTTT CCATATGGTG
CTGGCTGCCT ACTCCTCCTG ACTGCTTTGC CTTGCCCACT TCAGGAGAGT ACTGGATCGA
CCCTAACCAA GGCTGCAACC TGGACGCCAT CAAGGTCTAC TGCAACATGG AGACAGGTCA
GACCTGTGTG TTCCCTACTC AGCCGTCTGT GCCTCAGAAG AACTGGTACA TCAGCCCGAA
Y
CCCAAGGAAA AGAAGCACGT CTGGTTTGGA GAGAGCATGA CCGATGGATT CCCGGTACGT
GAGCTGAACC CCAGAGCAAC TCTACAGGAG ATGGGTTAGC CTCTTATCCA GAAAGCACAG
GAAGTCCTGG AGTGGATTTA ATCTGCTTAG TGGAAGGGCA GATACAGATC TAGGATACAG
GAGTTCTGGG TAGGAAAGCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336261 MGP_WTSI_11_94812159 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226585895 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336261 MGP_WTSI_11_94812159 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94841671 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
Tssr3647 transcription start site region 3647 1136 bp upstream
Tssr104261 transcription start site region 104261 1411 bp downstream
Tssr104262 transcription start site region 104262 671 bp downstream
Tssr104263 transcription start site region 104263 538 bp downstream
Tssr104264 transcription start site region 104264 516 bp downstream
Tssr104265 transcription start site region 104265 490 bp downstream
Tssr104266 transcription start site region 104266 478 bp downstream
Tssr104267 transcription start site region 104267 411 bp downstream
Tssr104268 transcription start site region 104268 383 bp downstream
Tssr104269 transcription start site region 104269 370 bp downstream
Tssr104270 transcription start site region 104270 349 bp downstream
Tssr104271 transcription start site region 104271 295 bp downstream
Tssr104272 transcription start site region 104272 101 bp downstream
Tssr104273 transcription start site region 104273 7 bp downstream
Tssr104274 transcription start site region 104274 4 bp upstream
Tssr104275 transcription start site region 104275 16 bp upstream
Tssr104276 transcription start site region 104276 26 bp upstream
Tssr104277 transcription start site region 104277 260 bp upstream
Tssr104278 transcription start site region 104278 312 bp upstream
Tssr104279 transcription start site region 104279 329 bp upstream
Tssr104280 transcription start site region 104280 384 bp upstream
Tssr104281 transcription start site region 104281 398 bp upstream
Tssr104282 transcription start site region 104282 444 bp upstream
Tssr104283 transcription start site region 104283 616 bp upstream
Tssr104284 transcription start site region 104284 641 bp upstream
Tssr104285 transcription start site region 104285 710 bp upstream
Tssr104286 transcription start site region 104286 732 bp upstream
Tssr104287 transcription start site region 104287 759 bp upstream
Tssr104288 transcription start site region 104288 781 bp upstream
Tssr104289 transcription start site region 104289 822 bp upstream
Tssr104290 transcription start site region 104290 868 bp upstream
Tssr104291 transcription start site region 104291 877 bp upstream
Tssr104292 transcription start site region 104292 915 bp upstream
Tssr104293 transcription start site region 104293 1063 bp upstream
Tssr104294 transcription start site region 104294 1100 bp upstream
Tssr104295 transcription start site region 104295 1158 bp upstream
Tssr104296 transcription start site region 104296 1177 bp upstream
Tssr104297 transcription start site region 104297 1210 bp upstream
Tssr104298 transcription start site region 104298 1248 bp upstream
Tssr104299 transcription start site region 104299 1276 bp upstream
Tssr104300 transcription start site region 104300 1296 bp upstream
Tssr104301 transcription start site region 104301 1420 bp upstream
Tssr104302 transcription start site region 104302 1432 bp upstream
Tssr104303 transcription start site region 104303 1446 bp upstream
Tssr104304 transcription start site region 104304 1485 bp upstream
Tssr104305 transcription start site region 104305 1510 bp upstream
Tssr104306 transcription start site region 104306 1525 bp upstream
Tssr104307 transcription start site region 104307 1541 bp upstream
Tssr104308 transcription start site region 104308 1611 bp upstream
Tssr104309 transcription start site region 104309 1631 bp upstream
Tssr104310 transcription start site region 104310 1676 bp upstream
Tssr104311 transcription start site region 104311 1772 bp upstream
Tssr104312 transcription start site region 104312 1842 bp upstream
Tssr104313 transcription start site region 104313 1858 bp upstream
Tssr110222 transcription start site region 110222 within coordinates
Tssr110223 transcription start site region 110223 366 bp downstream
Tssr110224 transcription start site region 110224 451 bp downstream
Tssr110225 transcription start site region 110225 664 bp downstream
Tssr110226 transcription start site region 110226 697 bp downstream
Tssr110227 transcription start site region 110227 736 bp downstream
Tssr110228 transcription start site region 110228 748 bp downstream
Tssr110229 transcription start site region 110229 808 bp downstream
Tssr110230 transcription start site region 110230 839 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory