rs226589084 SNP Detail

Summary

• ID
  rs226589084
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106342858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC AGCACGGCCC CCACCTCTAC
  T
  AGAACCGCCA GGATAAACCC CACCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323185278	CHEV_9_106367990	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226589084					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106342858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22268	CpG island 22268	within coordinates
Gpr62	G protein-coupled receptor 62	within coordinates
Pcbp4	poly(rC) binding protein 4	1647 bp downstream
Rr686360	regulatory region 686360	526 bp distal
Rr686361	regulatory region 686361	269 bp proximal
Tssr86919	transcription start site region 86919	1843 bp downstream
Tssr91318	transcription start site region 91318	764 bp upstream
Tssr91319	transcription start site region 91319	737 bp upstream
Tssr91320	transcription start site region 91320	357 bp upstream
Tssr91321	transcription start site region 91321	306 bp downstream