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rs226594642 SNP Detail
Summary
  • ID
    rs226594642
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:54801857 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCCTAGCAA CAGACAGCTA
CCTTAATATA GACCTCTGGC ACCATAAACA TCTAACTGTG GAGGCCGGAG TCATCTCAGT
CTGGGGCCCT TCAGCAGACA TGGCTGGTGT GGCCTTCATC CCAGATCTTG GTGGCTCTCA
GGAGGCTGCC ACAGGTGCAG TGGAGAGCAT GACAGCATCA GGCCGTCCCA TCATTCTCTT
Y
TGCTCTAGAG ACAAAGCCCT CTCCGTAACT CCTCACAGAG GGGCAAGGAG CAGGGGGCTC
GGGGCAGGTC CTGCTACTGA GCTTGAAGCA AAAACGGCAC ATGCACATGA GTTGGGTATG
GTCTCTGGAG AGCCTGGAAC CAAGTCTTTG AGGTTCTGTG AGAATGGGGT CTTGTTGCAC
CTCATTCTTA GGATGGAAGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383428930 MGP_WTSI_11_54724533 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226594642 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383428930 MGP_WTSI_11_54724533 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:54801857 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gpx3 glutathione peroxidase 3 644 bp downstream
Tnip1 TNFAIP3 interacting protein 1 within coordinates
Tssr3502 transcription start site region 3502 1387 bp upstream
Tssr3503 transcription start site region 3503 915 bp downstream
Tssr101565 transcription start site region 101565 1964 bp downstream
Tssr101566 transcription start site region 101566 1918 bp downstream
Tssr101567 transcription start site region 101567 1555 bp downstream
Tssr101568 transcription start site region 101568 1481 bp downstream
Tssr101569 transcription start site region 101569 1398 bp downstream
Tssr101570 transcription start site region 101570 1347 bp downstream
Tssr101571 transcription start site region 101571 1271 bp downstream
Tssr101572 transcription start site region 101572 1227 bp downstream
Tssr101573 transcription start site region 101573 1200 bp downstream
Tssr101574 transcription start site region 101574 1175 bp downstream
Tssr101575 transcription start site region 101575 1128 bp downstream
Tssr101576 transcription start site region 101576 1107 bp downstream
Tssr101577 transcription start site region 101577 1085 bp downstream
Tssr101578 transcription start site region 101578 1000 bp downstream
Tssr108010 transcription start site region 108010 1960 bp upstream
Tssr108011 transcription start site region 108011 1344 bp upstream
Tssr108012 transcription start site region 108012 1263 bp upstream
Tssr108013 transcription start site region 108013 1243 bp upstream
Tssr108014 transcription start site region 108014 1228 bp upstream
Tssr108015 transcription start site region 108015 1147 bp upstream
Tssr108016 transcription start site region 108016 1085 bp upstream
Tssr108017 transcription start site region 108017 1044 bp upstream
Tssr108018 transcription start site region 108018 1023 bp upstream
Tssr108019 transcription start site region 108019 954 bp upstream
Tssr108020 transcription start site region 108020 935 bp upstream
Tssr108021 transcription start site region 108021 918 bp upstream
Tssr108022 transcription start site region 108022 875 bp upstream
Tssr108023 transcription start site region 108023 651 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory