rs226607590 SNP Detail

Summary

• ID
  rs226607590
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81911246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCTCCAC TTGTTTGTTC TTATTACTGt
  ttgggacaga gtcttgtgtg tagacctgcg tacctggtac ttggtcatat ttgttccccg
  tgctggcctt gaattcaggg cgtcttactg tcttagtccc tcacctgctg ggattggcca
  W
  gtgcccccat gcccagTGCT GAACTCTGTT TGCAGCCCAT TCACTATTTG TGTTTTGACT
  AAGGTTATTG GACAGAGTAA CGCAGACTGG AACTTGGATG CTGTGAAAAC CTTTTACATA
  GGAAAGTACA GTCTGCTCGC TCATACTTGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033186	CHEV_15_81857475	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226607590					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81911246 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	597 bp proximal
Tssr132336	transcription start site region 132336	980 bp upstream
Tssr132337	transcription start site region 132337	1009 bp upstream
Tssr132338	transcription start site region 132338	1044 bp upstream
Tssr132339	transcription start site region 132339	1066 bp upstream
Tssr132340	transcription start site region 132340	1463 bp upstream
Tssr135523	transcription start site region 135523	804 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates