rs226616755 SNP Detail

Summary

• ID
  rs226616755
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:66685762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTAAAT ATCATTTCAT
  AATGTGTCTG TCTGTAGCAG GGAAAGCTAC GAGCATGCTG CTGGGTGAGA GAGAAGCCTA
  TTTCTAACGA GAAAAATGGC AGGCAGTAGT GCCTACAAAC TGCTCTCTGT CATTCCCATT
  TCCAAAGTTG AAAACCCCTC AGAGAGTTCA GTGATTTCCC CACAGTCCAC ACTTAGTCCG
  M
  ACAGAGCCAG AACAGAGTCT GGGGCCTATG TCTCAAGGAC CCCACCCAAC AAGTCCAATG
  CAGAAACTCA AAACAGTCAT TTAGAAACCT TGCTGGGTGT CCTTTGCAAA CATGAATTAC
  AAACAGTGGG GCAGAAGCTA AATTTAGTAC TTGCTATGTA GTAGACAGAT TCAGCTGGCT
  TGTAAAAAGC CAGCTCTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325003333	CHEV_15_66645475	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226616755					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66685762 () rs orientation: forward

Symbol	Name	Function Class
Rr369944	regulatory region 369944	27 bp upstream
Rr503569	regulatory region 503569	1331 bp distal
Rr503570	regulatory region 503570	830 bp distal
Rr503571	regulatory region 503571	171 bp proximal
Rr503572	regulatory region 503572	217 bp proximal
Rr503573	regulatory region 503573	1025 bp proximal
Sla	src-like adaptor	within coordinates
Tg	thyroglobulin	within coordinates
Tssr131484	transcription start site region 131484	1669 bp downstream
Tssr131485	transcription start site region 131485	1535 bp downstream
Tssr134585	transcription start site region 134585	1810 bp upstream
Tssr134586	transcription start site region 134586	1778 bp upstream
Tssr134587	transcription start site region 134587	1699 bp upstream
Tssr134588	transcription start site region 134588	1264 bp upstream
Tssr134589	transcription start site region 134589	1233 bp upstream
Tssr134590	transcription start site region 134590	1203 bp upstream
Tssr134591	transcription start site region 134591	1181 bp upstream
Tssr134592	transcription start site region 134592	687 bp upstream