rs226618018 SNP Detail

Summary

• ID
  rs226618018
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128768768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTCAGAGA CCAATTCACT ATGTAGCTTT
  GTAGGCTGGG CTGACTTCAG CCTTGTTCAC TGCTGAGATT GCAGGTCTGG GTCTTCAAGC
  CTGGCTTCCC ATCCCCCTCT TAGGttttga gacagggctg cactctgtag ctctgactgg
  S
  ctggaactct ccctgtagac caagttgctt tcgagatgac agagatcttc ctggctctgc
  ctattgagtg ctgggaatat aagcgcgtcc taccacaccc agctTGCCAT CCTTTTTTTG
  TTGCGTTGGA AATGACCAGT CTCTGGAAGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536802	CHEV_10_128369955	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226618018					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128768768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	852 bp proximal
Itga7	integrin alpha 7	877 bp upstream
Rr441373	regulatory region 441373	1092 bp distal
Rr441374	regulatory region 441374	426 bp proximal
Tssr96480	transcription start site region 96480	852 bp upstream
Tssr96481	transcription start site region 96481	877 bp upstream
Tssr96482	transcription start site region 96482	883 bp upstream