rs226629053 SNP Detail

Summary

• ID
  rs226629053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53861221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTTCGGT CCCCAGAACT AAATGTATTT
  AAAGTTCTCA AAACCACGCA GAAGAAAACA GGAAAAATAA CTTGAGTCTA AAAATCCAGT
  GCTGATAGCT CCCACTTAGA GTCAGCCGCC CCACGTGTAC AGGGAACAGT GTAGTGTACA
  Y
  ACATACAAGC CAGCACACAG GCATGTTGGC ATGTGCATTC CTAGCATTGC AGAGGCACCA
  GCCTTCTTCA GAGCCACAGA GTACAAGACT TGCCCCCTTC AGAGTGAGTG TCTTCTCATG
  GTCAGCAGAG ACGAGGCGTG AAAGAGACTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324044509	CHEV_12_54915425	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226629053					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53861221 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	1021 bp distal
Rr267638	regulatory region 267638	1622 bp distal