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rs226630426 SNP Detail
Summary
  • ID
    rs226630426
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:54799929 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACACTGGGC CTATGTATGT
CCATGCAAGT CGTGCGCTTG ATAAAGGAGA TTCCCAGCCC CCTTCCCTCA AGTCTCTTCA
TCTTAGTTCT GAGCTATGTG TGGCTGCTCT GGACTCACTC AAGTACACTC CTCCCAGGTA
TGTTCGACCA GGTGGGGGCT TTGTGCCTAA TTTCCAGCTC TTTGAGAAAG GAGATGTGAA
Y
GGGGAGAAAG AGCAGAAATT CTACACTTTC CTGAAGGTGA GAGTGGGTAA TATGGAGGAA
GCTCCCCTTA GCGGCTTAGG CCCTGGCCCA CAGGAATGTC TTGGCATTGG TCTAGTAGAC
CCATGAGAGG GCTTGGCAGA CCCAGTCCTA TCACCCTACT GCAGACGTAA GACAGGGTCC
ACAGCCTTCC AGTCAGCATA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383428904 MGP_WTSI_11_54722605 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226630426 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383428904 MGP_WTSI_11_54722605 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:54799929 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gpx3 glutathione peroxidase 3 within coordinates
Tnip1 TNFAIP3 interacting protein 1 1682 bp downstream
Tssr3502 transcription start site region 3502 538 bp downstream
Tssr3503 transcription start site region 3503 1012 bp upstream
Tssr101556 transcription start site region 101556 1973 bp downstream
Tssr101557 transcription start site region 101557 1943 bp downstream
Tssr101558 transcription start site region 101558 1926 bp downstream
Tssr101559 transcription start site region 101559 1903 bp downstream
Tssr101560 transcription start site region 101560 1857 bp downstream
Tssr101561 transcription start site region 101561 546 bp downstream
Tssr101562 transcription start site region 101562 499 bp downstream
Tssr101563 transcription start site region 101563 487 bp downstream
Tssr101564 transcription start site region 101564 466 bp downstream
Tssr101565 transcription start site region 101565 36 bp downstream
Tssr101566 transcription start site region 101566 within coordinates
Tssr101567 transcription start site region 101567 360 bp upstream
Tssr101568 transcription start site region 101568 436 bp upstream
Tssr101569 transcription start site region 101569 519 bp upstream
Tssr101570 transcription start site region 101570 541 bp upstream
Tssr101571 transcription start site region 101571 595 bp upstream
Tssr101572 transcription start site region 101572 690 bp upstream
Tssr101573 transcription start site region 101573 727 bp upstream
Tssr101574 transcription start site region 101574 741 bp upstream
Tssr101575 transcription start site region 101575 789 bp upstream
Tssr101576 transcription start site region 101576 803 bp upstream
Tssr101577 transcription start site region 101577 832 bp upstream
Tssr101578 transcription start site region 101578 915 bp upstream
Tssr108006 transcription start site region 108006 1818 bp upstream
Tssr108007 transcription start site region 108007 529 bp upstream
Tssr108008 transcription start site region 108008 468 bp upstream
Tssr108009 transcription start site region 108009 452 bp upstream
Tssr108010 transcription start site region 108010 32 bp upstream
Tssr108011 transcription start site region 108011 554 bp downstream
Tssr108012 transcription start site region 108012 588 bp downstream
Tssr108013 transcription start site region 108013 682 bp downstream
Tssr108014 transcription start site region 108014 689 bp downstream
Tssr108015 transcription start site region 108015 772 bp downstream
Tssr108016 transcription start site region 108016 824 bp downstream
Tssr108017 transcription start site region 108017 875 bp downstream
Tssr108018 transcription start site region 108018 890 bp downstream
Tssr108019 transcription start site region 108019 926 bp downstream
Tssr108020 transcription start site region 108020 982 bp downstream
Tssr108021 transcription start site region 108021 1002 bp downstream
Tssr108022 transcription start site region 108022 1013 bp downstream
Tssr108023 transcription start site region 108023 1266 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory