rs226639526 SNP Detail

Summary

• ID
  rs226639526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57386650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATGGGT GGTTCACAAC
  TTCAGCTCCA GTGGATCTGA AGCCTCTGGC TTCTAGATAC CCATTCACAC AATTAGAAAT
  AAAATCAATA TTATACTGAA AAAAATTAAA AAAAAAAAAG AAGTCTTAAG CGTGGCTACC
  CATCCTTGAG AAGCCAATCA GCTACACCTT TAATCCTAGC TCTCAGGAGG CAGAGGCAGG
  Y
  AGAGCTCTGT GAGTTTAGGG CCAGCTTGGG CTACACGGTG AGTCCCAGGA CAACCTGGAA
  CTCTCTACAT AGGGAGATCC TGTCTCAAAA ACACCAAAAC CCAAACCAAA CAAAATGCAG
  AAGATGCATT CAGTGATTCA GTGTGGCCAC ACTGGAAAGG GGGGGGGGAC GGGATGGGGG
  AGATCCAGTG ACCTTCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398570123	MGP_WTSI_17_57219073	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226639526					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398570123	MGP_WTSI_17_57219073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57386650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	1439 bp proximal
Dennd1c	DENN domain containing 1C	1132 bp upstream
Gm56907	predicted gene, 56907	within coordinates
Rr529265	regulatory region 529265	1151 bp distal
Rr529266	regulatory region 529266	1059 bp distal
Rr529267	regulatory region 529267	453 bp distal
Rr529268	regulatory region 529268	225 bp proximal
Tssr5182	transcription start site region 5182	569 bp upstream
Tssr145371	transcription start site region 145371	1041 bp downstream
Tssr145372	transcription start site region 145372	597 bp upstream
Tssr145373	transcription start site region 145373	944 bp upstream
Tssr145374	transcription start site region 145374	1038 bp upstream
Tssr148878	transcription start site region 148878	1233 bp upstream
Tssr148879	transcription start site region 148879	1192 bp upstream
Tssr148880	transcription start site region 148880	1166 bp upstream
Tssr148881	transcription start site region 148881	1131 bp upstream
Tssr148882	transcription start site region 148882	712 bp downstream
Tssr148883	transcription start site region 148883	807 bp downstream
Tssr148884	transcription start site region 148884	880 bp downstream
Tssr148885	transcription start site region 148885	957 bp downstream
Tssr148886	transcription start site region 148886	984 bp downstream
Tssr148887	transcription start site region 148887	1008 bp downstream
Tssr148888	transcription start site region 148888	1035 bp downstream
Tssr148889	transcription start site region 148889	1072 bp downstream
Tssr148890	transcription start site region 148890	1168 bp downstream
Tssr148891	transcription start site region 148891	1286 bp downstream
Tssr148892	transcription start site region 148892	1306 bp downstream
Tssr148893	transcription start site region 148893	1520 bp downstream
Tssr148894	transcription start site region 148894	1592 bp downstream
Tssr148895	transcription start site region 148895	1996 bp downstream
Tubb4a	tubulin, beta 4A class IVA	411 bp downstream