rs226641627 SNP Detail

Summary

• ID
  rs226641627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:6645517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATATAT ATACAACAGC
  CTATATCTCT TAGCAATCTG TTCATAGGAT TTGTCTCTTA ATCTCTTGGC TAATGGTTCA
  CCATCATCTA CAGCCTCCTC CTGGTTTTCC TTAATGTGTC ATGTCTCCAT ATCATTATAC
  TAATGTTTGT ATTGCAGGGA ATGTGAAGTA ACAAGTCATT GGATATTGGG TACTTGGGTC
  Y
  TGGGCTTTTT ATTCTTTGTT TAAGGATTTC ATGACAACAT ATTGGTATAC ATTATCTTCT
  TTAGAGAGAT TGAAAAGTTT TCAGGTTCTA CTAGCTCTTT TGGGCCTCAA CCACTGAAGC
  ATGGTACTAT CTGTCAGTCT GTTTCTTTTG GCTTTTTTTC TCCTTCCTTC CTTCCTTCCT
  TCCTTCCTTC CTTCCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321732661	CHEV_6_6595517	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226641627					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6645517 () rs orientation: forward

Symbol	Name	Function Class
Gm18006	predicted gene, 18006	within coordinates
Gm20618	predicted gene 20618	within coordinates