rs226642550 SNP Detail

Summary

• ID
  rs226642550
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74563799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agagagaga gGATGAGGAT GTGAGGGTGT
  GCAAGGGGTG AGGGTGTAAG GGGCGAGGGT GTGAGCAGGC TGCTCCCCAG ACAACAGGAG
  TTTaaaaaaa aaaaaaaaaa aaaaCCGCCT GGCTGGGGAC ACTCCTGGCG CACGCGGGCC
  K
  AGGTTGCCCG GTCGCCTGTG TCTACCAGGA ACAATGGTCG CTGTCACCGC ATCTGCCGCC
  TATTCTTAAA CCAGCGAGGA AAAAAAAAAA AAAGCCCCGG CCCTCTTTTC AAGCTAGGCT
  CGTAAATTTT TCTTTGCGTC ATAATAGAAG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348130	CHEV_2_74571512	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226642550					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74563799 () rs orientation: forward

Symbol	Name	Function Class
AI448005	expressed sequence AI448005	1703 bp distal
Cpgi11807	CpG island 11807	within coordinates
Cpgi11808	CpG island 11808	1957 bp proximal
Gm28230	predicted gene 28230	within coordinates
Hoxd3	homeobox D3	within coordinates
Igs15	intergenic site 15	within coordinates
Rr57049	regulatory region 57049	within coordinates
Rr373366	regulatory region 373366	1605 bp downstream