rs226656974 SNP Detail

Summary

• ID
  rs226656974
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23990758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTTCAGG CATATAGATG
  TTAGCAGATA GACGTCATTT CATTCGTCCC ATCAATCTCT GGGCATTGCG CCCATTTCAA
  CCCTGTTTCT TCATGTAGAA GCCAGTTCTA GCAGGCGGGG TGCTTTGTCT GCAGACGAAG
  AAAGCTCTAG GAGCAAAGGT GGGGATGACT TCAGAGATTC AGGCTAAGGA GCCCCACTGC
  W
  GCTTGCATTC CACACCTCTT TCCACTTTCA GCGAAGTGGC TTGTTGACTG AATGTCTGTG
  TGCATAGTTC AAAGCAGAAA AACATAGTGA CACCGTTGAG ATACTCACTA GGTCGGTGAG
  AACTTGAAAG TGAAGTTAAA AATTAAGCAG CCACGCCAAA TGCAGATTCT CTGTCCCAAG
  AGCACAGGGT CAAACCTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292028	CHEV_13_23898644	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226656974					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23990758 () rs orientation: forward

Symbol	Name	Function Class
Rr475952	regulatory region 475952	1958 bp distal
Rr475953	regulatory region 475953	within coordinates
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	218 bp upstream
Tssr118868	transcription start site region 118868	211 bp upstream
Tssr118869	transcription start site region 118869	254 bp upstream
Tssr118870	transcription start site region 118870	290 bp upstream
Tssr118871	transcription start site region 118871	320 bp upstream