rs226677877 SNP Detail

Summary

• ID
  rs226677877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139682762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT AGTTTTAAGT AGCTGAGAGC
  W
  TCACCAGGGG AGAGCCTTCT TAGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322470003	CHEV_7_147288748	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226677877					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139682762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19895	CpG island 19895	369 bp distal
Fuom	fucose mutarotase	408 bp upstream
Rr154614	regulatory region 154614	439 bp proximal
Rr166902	regulatory region 166902	within coordinates
Tssr75501	transcription start site region 75501	828 bp upstream
Tssr75502	transcription start site region 75502	492 bp upstream
Tssr75503	transcription start site region 75503	471 bp upstream
Tssr75504	transcription start site region 75504	421 bp upstream