rs226678235 SNP Detail

Summary

• ID
  rs226678235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115169007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATAATTA AAATAAGGGC
  AGGACCCATT GTCACCTCTA ACCAGACAAG CCCAGTGCTT CTCTGAGAGT CCTTCTCCTT
  CTTGGAAGAC TAACCTGTCA TCCTCACAAC ATCTGATTCT TGTTTATTCT TGTTGAAGAT
  TGAACCCAGG GACTTACAAA ATTGCTCTAC GTTTTAACTG CCCCCTGCCT CGCCCCGCCC
  Y
  GCCCCGCCCC TAGCTGAATC TTCTATTCCA TAATTCAGGT ACAAAGCTAG CCTGGGCTGT
  ATACAGAGTG GCACCTGATC TCACAAAACA GTATGCCACT TGTTTTGTGA GAGGGAAATG
  GCAGTAGGAA CGTGGTCATA CCAATGGAAA CTGGCTTGAC TGACCTGACT GTAATCTGGA
  ATTCTTGGGC CAGATGAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384825603	MGP_WTSI_11_115139495	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226678235					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384825603	MGP_WTSI_11_115139495	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115169007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4117	CpG island 4117	720 bp distal
Fads6	fatty acid desaturase domain family, member 6	1441 bp downstream
Fdxr	ferredoxin reductase	1131 bp upstream
Gm74405	predicted gene, 74405	within coordinates
Rr231868	regulatory region 231868	1594 bp proximal
Rr246090	regulatory region 246090	6 bp distal
Rr403113	regulatory region 403113	844 bp downstream
Tssr105852	transcription start site region 105852	752 bp downstream
Tssr111738	transcription start site region 111738	1275 bp upstream
Tssr111739	transcription start site region 111739	1238 bp upstream
Tssr111740	transcription start site region 111740	1209 bp upstream
Tssr111741	transcription start site region 111741	1197 bp upstream