rs226681286 SNP Detail

Summary

• ID
  rs226681286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130554360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agtccaATG ACTGTGTGCA GTTGGGCAGG
  GGCTTGCTGT TCATCCCCTC AGGGAGACTC CAGCTTCAGG CTGCAAAGAG AATCTTGCCC
  TAAAGGATAT AGGAACTGGA GCCATGCACG AGGAGAGACT GTGCCCTTGG GGTCTGATAT
  R
  TTCATTCTTG TTGGGTTTTG Gttttggttt ttggagacag gtctctctgt gtagcattgg
  ctgtcctgga actcactctg tagaccaggc tggctttgaa cacagagatc cccctgcctc
  tgcctcccga atgctagggt taaaggcgtg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318885	CHEV_4_130382964	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226681286					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130554360 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	736 bp upstream
Gm69250	predicted gene, 69250	1904 bp upstream
Rr600596	regulatory region 600596	1596 bp proximal
Rr600597	regulatory region 600597	1915 bp proximal
Sdc3	syndecan 3	731 bp downstream
Tssr39293	transcription start site region 39293	1171 bp downstream
Tssr39294	transcription start site region 39294	1011 bp downstream
Tssr39295	transcription start site region 39295	846 bp downstream
Tssr39296	transcription start site region 39296	818 bp downstream