rs226682102 SNP Detail

Summary

• ID
  rs226682102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128770601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGAAAAC AGAAATAGCT ACTGTCAAAG
  CATCACCATG AGATAGCGTG AGGACTGCAG GGCATGGAGG CCAGGAGTGG TGTGGCTTAA
  CACAGCAGGG AGACTAGAGG AAGAGCTGAG AAGGCCTGAC AGTCTTCAGT GATGGTCACA
  R
  ACGGTGGCAG AGACTGTCTG AAAAATAGAG ACTGTCTGAG CAGTAGCAAG AAATGGTGGC
  AGCTGTCACC ACCATCGCCA GAGAcagcag cagcagcagc agcagcagca gcagcagcag
  cagcagcagc agcagcagGA GGATACAGTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536819	CHEV_10_128371788	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226682102					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128770601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	468 bp distal
Gm67752	predicted gene, 67752	1073 bp downstream
Itga7	integrin alpha 7	Intron
Rr441374	regulatory region 441374	902 bp distal
Rr441375	regulatory region 441375	586 bp proximal
Rr441376	regulatory region 441376	856 bp proximal
Tssr96480	transcription start site region 96480	969 bp downstream
Tssr96481	transcription start site region 96481	951 bp downstream
Tssr96482	transcription start site region 96482	904 bp downstream