rs226688928 SNP Detail

Summary

• ID
  rs226688928
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35725117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAAAAGAA AAGGGGCTGG
  TCTTACTTTC GTTTTTCAAA ATTGTGACAC TGTTCCAGAC CAACACTGGC GGCTTCTTGG
  GAAGTTTCCG GCTGGGTCTC AGGGCACACC TGTCCTGCTC TAACCTGGCC TGGGCGACCA
  GCAGAGTGAG CCTCGCTCGC TGTCCACCCT CTCTTCTCTG AGTGACAGTC GCACGACCCG
  K
  CCAAGAGGAA AGGGCCAGCG GAGCAGCAAG GCTTCGCAAG CCCCGAGGTC CCGGACTGGG
  GTCGCCGCGG CCGCCTGTGG AAGCCACTGC GGACTCTGCC CCGCCGCCGC CCGCTCCAGA
  GCCCTCCGCC CCGCCCAGGG ACAAACCTGC TGCAGCAACC GCGCGGAGCA CTGAGCCACC
  AGACCGTCCA TCCTCTCGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382990259	MGP_WTSI_11_35647792	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226688928					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382990259	MGP_WTSI_11_35647792	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35725117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2730	CpG island 2730	within coordinates
Rars1	arginyl-tRNA synthetase 1	within coordinates
Rr402482	regulatory region 402482	81 bp upstream
Rr445140	regulatory region 445140	1677 bp distal
Rr445141	regulatory region 445141	607 bp distal
Rr445142	regulatory region 445142	within coordinates
Rr445143	regulatory region 445143	46 bp distal
Rr445144	regulatory region 445144	206 bp proximal
Rr445145	regulatory region 445145	298 bp proximal
Tssr3462	transcription start site region 3462	84 bp downstream
Tssr3463	transcription start site region 3463	167 bp downstream
Tssr107407	transcription start site region 107407	983 bp upstream
Tssr107408	transcription start site region 107408	202 bp downstream
Tssr107409	transcription start site region 107409	228 bp downstream
Tssr107410	transcription start site region 107410	1737 bp downstream