rs226695042 SNP Detail

Summary

• ID
  rs226695042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106552412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCAAGGT CACCTGACTT
  TGACTGTGTG AACACTGTTT ATCCAGATGA CAGTGGCTGC CACAGCTTTG AAGAGAGCTG
  CGCAGACTCT GCTGTCCCTT TGAAGCTTCC TGATGCCTCT CCTTGTCTCA GTGCCATAAA
  AAGGAACCTC AACCTCGAAA ACAAGGGAAG TCACAAACAC CACATGCTAG CAGGGGAAAC
  M
  CCACTTGCCC TTTGAATTGT TAATGTAACC TTGTTACTTA CAACCCCGAT CTATGACTAT
  CTAATTACAA TACAAAAAAA AGTGCCCTCC GCTCCACCTA TAATGTGCCC ACTGCTCTCA
  AAGCCCACTC ACTGTTCAGA CCAGATCGTG TCTCTAGTCA GAGGAGTGGT AGCCCGGATC
  CAAGTAGGTC AGCAGGCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375919887	MGP_WTSI_8_108349680	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226695042					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375919887	MGP_WTSI_8_108349680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106552412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20953	CpG island 20953	1111 bp proximal
Ranbp10	RAN binding protein 10	Intron
Rr401097	regulatory region 401097	1299 bp upstream
Rr669014	regulatory region 669014	1573 bp distal
Rr669015	regulatory region 669015	636 bp distal
Rr669016	regulatory region 669016	1560 bp proximal
Rr669017	regulatory region 669017	1975 bp proximal
Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	1951 bp upstream
Tssr79188	transcription start site region 79188	1941 bp upstream
Tssr79189	transcription start site region 79189	1973 bp upstream
Tssr79190	transcription start site region 79190	1990 bp upstream
Tssr82694	transcription start site region 82694	525 bp downstream
Tssr82695	transcription start site region 82695	1410 bp downstream
Tssr82696	transcription start site region 82696	1813 bp downstream
Tssr82697	transcription start site region 82697	1837 bp downstream
Tssr82698	transcription start site region 82698	1862 bp downstream
Tssr82699	transcription start site region 82699	1900 bp downstream