rs226697685 SNP Detail

Summary

• ID
  rs226697685
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10159213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAGCTAAT CTGTTCATCA
  CAGTGAGTTC CAGATCAGCC AGGGCTACTG CTTCCAGGGA CAAAAATAAC AACAAAACAC
  AATACGAAAC TAAGATCACT AGAAATAGAA AATGCTAAAG CTAATTGCAA ATGTTAAACT
  ACATACAAAG AAGGCAAGGC TGGCCTTTCT TCGTTTTATT TTTGTTTTAA AATCGTTTTT
  W
  AAATTGCATT TATTTATTTA TTTACGTGTG TGTGTGTGTG TGTGTGCTGC CATGAATTGC
  AGGCAATGTA GGCTAGAAGA AAAACTTGTG GAAGTCAGTA CTCTCCTTCC ATCTTGTGGG
  TCCCAGGGAT CCATTTCAGG TCACTGGGTT TTGCATCAGG CAACTGTTCC TCCTGAACCA
  TAGAGCTATC ATTAGTATTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401724142	MGP_WTSI_19_10256339	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226697685					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401724142	MGP_WTSI_19_10256339	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10159213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	355 bp proximal
Fads1	fatty acid desaturase 1	1039 bp upstream
Gm59251	predicted gene, 59251	within coordinates
Rr356592	regulatory region 356592	1413 bp distal
Rr362958	regulatory region 362958	387 bp proximal
Rr363808	regulatory region 363808	1614 bp distal
Tssr155024	transcription start site region 155024	1019 bp upstream
Tssr155025	transcription start site region 155025	1036 bp upstream
Tssr155026	transcription start site region 155026	1057 bp upstream
Tssr155027	transcription start site region 155027	1072 bp upstream
Tssr155028	transcription start site region 155028	1145 bp upstream
Tssr155029	transcription start site region 155029	1158 bp upstream
Tssr155030	transcription start site region 155030	1188 bp upstream
Tssr155031	transcription start site region 155031	1298 bp upstream
Tssr155032	transcription start site region 155032	1673 bp upstream
Tssr158164	transcription start site region 158164	1607 bp downstream