rs226699774 SNP Detail

Summary

• ID
  rs226699774
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192453405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCCCCTGT CTGTCTCGCG CGGGCGAAAT
  CACCTGGATC GCAGTGTGCA GAGCTGGGCG AGCGGGAGAG AAGGCGTCCC TGCACCCCGC
  CGCGCTGAGC CGCGGCCCGG GAGGGACTCG CGAGCACAGC GCGGGTCAGA GGCCGCGGGG
  K
  TGAGCGCCTG GCCTGAGATG TTGTGCCCGG GTTCCCGAAC GCAGGATTGG CCAGGGCTCT
  GTACATTTAC TGGAGCCGAA TCATTACACA GGGTCCCACC AGAACCTCAG GCTCCAGGAT
  TCTTCCGGTC CCCAAAGGAA TGAGTCTGGG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320200024	CHEV_1_194597291	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226699774					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192453405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1234	CpG island 1234	within coordinates
Hhat	hedgehog acyltransferase	mRNA-UTR
Rr426393	regulatory region 426393	within coordinates
Rr426394	regulatory region 426394	499 bp distal
Rr426395	regulatory region 426395	106 bp proximal
Tssr15828	transcription start site region 15828	102 bp downstream