rs226704686 SNP Detail

Summary

• ID
  rs226704686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131650494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGGGCGA TGAGGTGGAA TGAGACCCTC
  TGCAGCTGTC TGGGGCAGTG ACCGCAACTC TAACTGCCAC CACCTCAGGT CTGTTCTTCC
  TTCAGTCAAG TGGCTCTGTC CCGGCAGGGC TAACTACTGC CAAAGCCCTG ACCCTGGGAT
  Y
  GGACTGCTCC CCTGGAGACA GGTCGGTCTG ACCTGTGTGC AAAGCCTCCC CCAGCTGGCA
  GAGGCACCCT CCAGTTCTCA GCACTTCCTT CCCACTGCAC CCTAGCCCAG TGTGGGTAGC
  TCACTGCACT CGGCGGCGGC GGCAGCTTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329104	CHEV_4_131479098	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226704686					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131650494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	244 bp distal
Epb41	erythrocyte membrane protein band 4.1	230 bp downstream
Gm50475	predicted gene, 50475	1655 bp upstream
Rr85752	regulatory region 85752	1707 bp proximal
Rr100128	regulatory region 100128	93 bp distal
Tmem200b	transmembrane protein 200B	43 bp downstream
Tssr1320	transcription start site region 1320	1489 bp downstream
Tssr39359	transcription start site region 39359	1976 bp downstream
Tssr39360	transcription start site region 39360	244 bp upstream