rs226706757 SNP Detail

Summary

• ID
  rs226706757
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134733047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGCATAC ACCACCTTGC
  TTGGTTTTAT ACTATGCTAG GGATGAAACC TAGAGCTATA TTCTCATTGC TTGCTCGCTC
  TCATTCATTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TGGTTGGGGT TGTTGTTGAC ACTGTTTCCT ATAGAGTTCA GGCTGGCCAA TGCTTCTGCC
  M
  CAGCCTGCTG AATTCTGAGA AGACCTGTTT AGCAAACCTG GGGATAGATA GCCTGGGGTA
  GGGAGGTAGC ACAGGCTGGT GTCTAGCCCT CATGTAGTTT CTCCCAGATG TGGCCTGTTA
  GTGCCACCTG GTGGTCTGTC CTGGAAGTCC TTCCCACTCT CTTTCATTGT CTCTTTCAAG
  TCCCAGACTC CTCTGTGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321696577	CHEV_5_135180063	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226706757					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134733047 () rs orientation: forward

Symbol	Name	Function Class
Eln	elastin	within coordinates
Rr110186	regulatory region 110186	within coordinates
Rr131008	regulatory region 131008	within coordinates
Rr399407	regulatory region 399407	within coordinates
Tssr49100	transcription start site region 49100	1113 bp downstream
Tssr49101	transcription start site region 49101	628 bp downstream
Tssr53672	transcription start site region 53672	1168 bp upstream
Tssr53673	transcription start site region 53673	1126 bp upstream
Tssr53674	transcription start site region 53674	1019 bp upstream
Tssr53675	transcription start site region 53675	1006 bp upstream
Tssr53676	transcription start site region 53676	945 bp upstream
Tssr53677	transcription start site region 53677	840 bp upstream
Tssr53678	transcription start site region 53678	810 bp upstream
Tssr53679	transcription start site region 53679	787 bp upstream
Tssr53680	transcription start site region 53680	754 bp upstream
Tssr53681	transcription start site region 53681	657 bp upstream
Tssr53682	transcription start site region 53682	587 bp upstream
Tssr53683	transcription start site region 53683	369 bp upstream