rs226713940 SNP Detail

Summary

• ID
  rs226713940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:112425695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTTTG ATCAGCACAA
  AGGTAACACG ATGTTTTACC ACTCCAATGG CGAAGAGATT TCCAGTTTGT AAGGAGAAGA
  GGAAAGGTGT GTGTGTGTGA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGAAAAC AAACCTGGTA AGGACTTGAT AAGCTTTTAG GAAAAGAAAA
  R
  AAAAAAAAAG CTTACGGGCT TTCTGTCTTG CGGATGTATT CCTAGTCCTA CTCTTTGGTT
  TGAGACATAT CAGCTACTTT AGATAGTATC ATCTTTATGT CATGTCATAA AGTATGTTAG
  AGAAAGCAAT ATCAGAATGC ATACCGGGCC TCTTTCAGCC CGTAAATCTC ATATTTCGTC
  ACTTCAGCCA TCACGAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324528919	CHEV_13_113079369	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226713940					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112425695 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd55	ankyrin repeat domain 55			Intron
				Noncoding-Transcript-Variant
Gm55074	predicted gene, 55074			1960 bp upstream
Rr486330	regulatory region 486330			331 bp distal
Rr486331	regulatory region 486331			within coordinates
Tssr121099	transcription start site region 121099			654 bp downstream
Tssr121100	transcription start site region 121100			613 bp downstream
Tssr121101	transcription start site region 121101			567 bp downstream
Tssr121102	transcription start site region 121102			355 bp downstream
Tssr124046	transcription start site region 124046			9 bp upstream