rs226725783 SNP Detail

Summary

• ID
  rs226725783
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTGCAGA GGATCCCTGC TCAGTTCCCA GCACCCACAC
  AGTGGCTCAC AACAGTCTGC AATTCCAGCT CCAGGGGATC CAATATTTTC ATCTGATCTC
  T
  GTGTACACCA AACACACACA TGTTGTGCAT ACATATGGGA AAGCAAAATA CTCATACATA
  AAATAATTTT CTAGCCGGGC AGTGATGGCA CATGCCTTT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546749	CHEV_11_3072505	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226725783					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	within coordinates
Cpgi2458	CpG island 2458	762 bp proximal
Rr441481	regulatory region 441481	52 bp distal
Rr441482	regulatory region 441482	1220 bp distal
Rr441483	regulatory region 441483	286 bp distal
Rr441484	regulatory region 441484	169 bp proximal
Rr441485	regulatory region 441485	689 bp proximal
Rr441486	regulatory region 441486	1471 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	293 bp downstream
Tssr106449	transcription start site region 106449	817 bp downstream