rs226727697 SNP Detail

Summary

• ID
  rs226727697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34844107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCCTGT GCCACACCAC
  TCTTGACTCC CTAGCAAGCA TTCATCCGTT TGTTTACTGG TGCTGGCGAT TGAACTTAGG
  GCCTCACACT TGCTTGTACT CTACTACTGT GCTAGCACTA TGGCTTTTTT TTTTTTTTTG
  TAAGACTTTC AAGTATACAG AAAAAATTTA AAACTGTATT TTGAAAATCC ATTCTTAATT
  R
  TCTTTTACAG TAGGAAATAC GTTGGCAGGG ATCAAAACTT AAAATATACA CAAAATGCAT
  ATATACGGTG AAACCCTGTT TCAAATCACT TTACTTGAAT CAGCTAATTT TGTATGTTCC
  TCAGATGCTG GTATTAGCAC AGGCCAATAA TACACACTTG CACAAACGTT GTAAGCCTAA
  AGAAATTATG TTGCTTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395918482	MGP_WTSI_16_35023823	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226727697					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395918482	MGP_WTSI_16_35023823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34844107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	433 bp distal
Gm21691	predicted gene, 21691	1401 bp upstream
Hacd2	3-hydroxyacyl-CoA dehydratase 2	within coordinates
Rr404796	regulatory region 404796	1300 bp downstream
Rr515294	regulatory region 515294	1492 bp distal
Rr515295	regulatory region 515295	1299 bp distal
Rr515296	regulatory region 515296	416 bp distal
Rr515297	regulatory region 515297	740 bp proximal
Tssr138201	transcription start site region 138201	1297 bp downstream
Tssr138202	transcription start site region 138202	1258 bp downstream
Tssr138203	transcription start site region 138203	276 bp downstream
Tssr138204	transcription start site region 138204	1871 bp upstream
Tssr138205	transcription start site region 138205	1909 bp upstream