rs226727958 SNP Detail

Summary

• ID
  rs226727958
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144555205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCATTC AGAGTTCCCA
  TTGAGAAATA AGCTGTTATA CTGATGGGTA TTCCTTTATA TGTAGCTTTA TATTTTTTCT
  CTTGCAGTTT CCTTCCTTCC TTCCTCCCTC CCTCCCTCTC TCTCTTTTCC TCCCTTCCCT
  TCCCTCCCCT CCCCTCCCCT CCCCTCCCCT CCCCTCCCCT CCCCTCCCCT CCCCTTTCTT
  T
  TTTTGAGACA GGGGTTCTCT GCATAGCCCT TGCTGTCCTG GAACTCACTC TGTAGACCAG
  GCTGGCCTCG AACTCAGAAA TTCGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGTG
  TGTGCTACCA CTGCCCAGCT TCTCTTGCAG GTTTCTATAC ACTTCCTCTG TTCTGCTTAT
  TTAATGTTCT AACCGTGATT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss355988970	MGP_WTSI_2_144539021	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs226727958					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355988970	MGP_WTSI_2_144539021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144555205 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr374001	regulatory region 374001	1466 bp upstream
Tssr20549	transcription start site region 20549	1498 bp upstream
Tssr20550	transcription start site region 20550	1560 bp upstream
Tssr26613	transcription start site region 26613	1273 bp downstream