rs226730529 SNP Detail

Summary

• ID
  rs226730529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:75414067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGC TTAAGTAGCC CAGGGCCTGC
  W
  GAGAGAGACC CAGGGTGGGA AGCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324673321	CHEV_14_75576434	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226730529					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75414067 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lcp1	lymphocyte cytosolic protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr369874	regulatory region 369874			1383 bp upstream
Rr404213	regulatory region 404213			55 bp upstream
Rr495436	regulatory region 495436			1222 bp distal
Tssr4478	transcription start site region 4478			1675 bp downstream
Tssr126621	transcription start site region 126621			1649 bp downstream
Tssr126622	transcription start site region 126622			1619 bp downstream
Tssr126623	transcription start site region 126623			22 bp downstream
Tssr126624	transcription start site region 126624			6 bp upstream
Tssr126625	transcription start site region 126625			165 bp upstream
Tssr126626	transcription start site region 126626			180 bp upstream
Tssr126627	transcription start site region 126627			196 bp upstream
Tssr126628	transcription start site region 126628			507 bp upstream
Tssr126629	transcription start site region 126629			1182 bp upstream
Tssr126630	transcription start site region 126630			1221 bp upstream
Tssr129768	transcription start site region 129768			1820 bp upstream
Tssr129769	transcription start site region 129769			24 bp upstream
Tssr129770	transcription start site region 129770			22 bp downstream
Tssr129771	transcription start site region 129771			1774 bp downstream