rs226735300 SNP Detail

Summary

• ID
  rs226735300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118858095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTGGAT CCCTGCTGGG
  TCTGGCCAGC ATGTACTCTC ATCTCCCCTT CTCCCTCTGG AAATTTCTCT CTTCTCTGGG
  GAGGGTGGGG GGGGGCTTCT TTTCCCTTTC TATTAATTTA TTTATTTATT CACTTTACAT
  CCCAGCCACA GGCCCTTCTT CCACTTCCCC CTCACACAGC CCTTCCCCAT CCCCTCTTCC
  Y
  CTTCACCTCT GAGGAGGAGC TCCCTGCCCC CCCACCCCCA ATCCCACCCC CACCCCCACC
  CTGTACCAAC CCACCCTCGA ACCTCAAGTC ACTACAAGGC TAGAGACATC CTCTCCCACT
  GAGACCAGAC AAGGCAGCCC AGTTGGGGAA CAGGATCCAT GGGCAGGCAA CAGAGTCAGT
  GTAAGCCCCA GCTCCAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss363006518	MGP_WTSI_4_118673503	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs226735300					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363006518	MGP_WTSI_4_118673503	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118858095 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	1440 bp downstream
Gm12862	predicted gene 12862	413 bp upstream
Rr398425	regulatory region 398425	1045 bp downstream
Rr598452	regulatory region 598452	1455 bp distal
Rr598453	regulatory region 598453	424 bp distal
Rr598454	regulatory region 598454	323 bp distal
Rr598455	regulatory region 598455	796 bp proximal