About   Help   FAQ
rs226740158 SNP Detail
Summary
  • ID
    rs226740158
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:30306646 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGGCCTGGGC TGCAGGCGGG
    TGGCGGTGAG GGCGACCCGG CCAGGGCGGG CGGGCAGAGC GCGGTCAGGG GAAAGGCTCT
    GGACCTGGGG GCAGAGTTGC CTGGGGTCGG GGCGAGAGGG ATCCAGGAGG CTGCGTTCTT
    TATGAGACTC CGCTCGGGTG GACCTGGGCC TCGCTCGGAC GCCAGGCTCC TTCATGCATG
    Y
    CCTGCCCACC CTGCATGTCT TCCCTCCCTC CGTCCCTCCT TCCGTCCTGC AGGCTTGGCT
    CTGGGGGTTT CAGTATCTGC AGAGTTAATT GAGAGAAACT GCCCACGGTG TCTAAACCAC
    TAATTTTAAG AGGCTGTTTG TACAAAATGA GAGGGTTGGT GGCATCGTCG TCTGTAACTT
    TTATTTACAC TGTGGCCTCG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353515413 MGP_WTSI_2_30272154 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226740158 SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353515413 MGP_WTSI_2_30272154 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:30306646 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11436 CpG island 11436 within coordinates
Crat carnitine acetyltransferase 1044 bp upstream
Gm16323 predicted gene 16323 1296 bp downstream
Ptpa protein phosphatase 2 protein activator within coordinates
Rr554312 regulatory region 554312 1121 bp distal
Rr554313 regulatory region 554313 482 bp distal
Rr554314 regulatory region 554314 within coordinates
Tssr17115 transcription start site region 17115 951 bp downstream
Tssr17116 transcription start site region 17116 557 bp downstream
Tssr17117 transcription start site region 17117 544 bp downstream
Tssr17118 transcription start site region 17118 487 bp downstream
Tssr17119 transcription start site region 17119 413 bp downstream
Tssr23371 transcription start site region 23371 1266 bp upstream
Tssr23372 transcription start site region 23372 1224 bp upstream
Tssr23373 transcription start site region 23373 1205 bp upstream
Tssr23374 transcription start site region 23374 1185 bp upstream
Tssr23375 transcription start site region 23375 1129 bp upstream
Tssr23376 transcription start site region 23376 1074 bp upstream
Tssr23377 transcription start site region 23377 1022 bp upstream
Tssr23378 transcription start site region 23378 1010 bp upstream
Tssr23379 transcription start site region 23379 926 bp upstream
Tssr23380 transcription start site region 23380 860 bp upstream
Tssr23381 transcription start site region 23381 589 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory