rs226751400 SNP Detail

Summary

• ID
  rs226751400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54802566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGCCCA TCACAGTCAT
  TGTCTGCAGA CTCTAGATAA ACAAAAGTTT TGAAGCTTCA AGATCATGTG GTCTGGTCAG
  TCTCACACTC TCACATGGAT GCCAAATCAG GCCTCCCCAC CAGTGTAAAC AGCTAGGTAT
  TGTATGCTAT GGAGTACCAG GCTGTGTCTA AGACATTCAC CATGCAATCT ATATCTAGCC
  Y
  CGAGGAGGAA GAGGCCATTT GTCACCTCTG TAACAGAGGA GGGAGCTAGG ACAAAGAGGT
  ATACAAATCT GTCCCAAATC CCAGATTTAT AATGTTCTGG AGCTAGGATT TGAACTCAGT
  TCGTCGTCTC CAAATCCCCA AAGTAAACAC TGGGAAAAAG GGGTCAGCTC TGCCTACCGT
  GCCACCCTCT GCCACTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428947	MGP_WTSI_11_54725242	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226751400					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428947	MGP_WTSI_11_54725242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54802566 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	1353 bp downstream
Tnip1	TNFAIP3 interacting protein 1	within coordinates
Tssr3503	transcription start site region 3503	1624 bp downstream
Tssr101571	transcription start site region 101571	1980 bp downstream
Tssr101572	transcription start site region 101572	1936 bp downstream
Tssr101573	transcription start site region 101573	1909 bp downstream
Tssr101574	transcription start site region 101574	1884 bp downstream
Tssr101575	transcription start site region 101575	1837 bp downstream
Tssr101576	transcription start site region 101576	1816 bp downstream
Tssr101577	transcription start site region 101577	1794 bp downstream
Tssr101578	transcription start site region 101578	1709 bp downstream
Tssr108012	transcription start site region 108012	1972 bp upstream
Tssr108013	transcription start site region 108013	1952 bp upstream
Tssr108014	transcription start site region 108014	1937 bp upstream
Tssr108015	transcription start site region 108015	1856 bp upstream
Tssr108016	transcription start site region 108016	1794 bp upstream
Tssr108017	transcription start site region 108017	1753 bp upstream
Tssr108018	transcription start site region 108018	1732 bp upstream
Tssr108019	transcription start site region 108019	1663 bp upstream
Tssr108020	transcription start site region 108020	1644 bp upstream
Tssr108021	transcription start site region 108021	1627 bp upstream
Tssr108022	transcription start site region 108022	1584 bp upstream
Tssr108023	transcription start site region 108023	1360 bp upstream