rs226766202 SNP Detail

Summary

• ID
  rs226766202
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66207336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGTAGG CCAGCCTCCA
  AAAGAAGACA GGAAGTAAGT CAGTGTAGAG GGAAGGCAGC GGGCTGAACT GAGCAGCGTT
  GTCCTTGGAA CAACAACACC ACAGCGCCGG GAAACTTGGG AGACTAGCAG ATTCTGACCC
  GGAGTCCATA TTACCAGCAG ACCTAGAGGG AGTCTGTTCT TAGCTTTACT GAATAGAGGA
  K
  CGCTTCTTTG AGGTCTGTAT CAGGTCCATT TTACAGATAA AGAAACCAAG GCCGAGAGAT
  TTAGGACTTT TTATTGTCAA GGAAAGAATA TTAAAATGAG GTTTCAGAGG GCTGCATTCT
  TCCTGGGGGG TGGAGAGTGG GGGTGGGGGT TGGCTACTGG CTTGCAGTGT GTCTTGGGGA
  GCCTGGCAGG TGTCTGGGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367300	MGP_WTSI_14_66588724	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226766202					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367300	MGP_WTSI_14_66588724	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66207336 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Cpgi6638	CpG island 6638	789 bp distal
Rr290025	regulatory region 290025	1336 bp distal
Rr297400	regulatory region 297400	within coordinates
Rr297401	regulatory region 297401	1264 bp proximal
Tssr126237	transcription start site region 126237	1377 bp downstream
Tssr126238	transcription start site region 126238	1363 bp downstream
Tssr126239	transcription start site region 126239	1348 bp downstream
Tssr126240	transcription start site region 126240	1329 bp downstream
Tssr126241	transcription start site region 126241	1320 bp downstream
Tssr126242	transcription start site region 126242	1290 bp downstream
Tssr126243	transcription start site region 126243	1280 bp downstream
Tssr126244	transcription start site region 126244	1262 bp downstream
Tssr126245	transcription start site region 126245	1236 bp downstream
Tssr126246	transcription start site region 126246	1230 bp downstream
Tssr126247	transcription start site region 126247	149 bp downstream
Tssr126248	transcription start site region 126248	95 bp downstream
Tssr126249	transcription start site region 126249	66 bp downstream
Tssr126250	transcription start site region 126250	641 bp upstream
Tssr126251	transcription start site region 126251	699 bp upstream
Tssr126252	transcription start site region 126252	707 bp upstream
Tssr126253	transcription start site region 126253	723 bp upstream
Tssr126254	transcription start site region 126254	741 bp upstream
Tssr126255	transcription start site region 126255	774 bp upstream
Tssr126256	transcription start site region 126256	997 bp upstream
Tssr126257	transcription start site region 126257	1162 bp upstream
Tssr126258	transcription start site region 126258	1226 bp upstream
Tssr126259	transcription start site region 126259	1277 bp upstream
Tssr126260	transcription start site region 126260	1839 bp upstream
Tssr126261	transcription start site region 126261	1909 bp upstream
Tssr126262	transcription start site region 126262	1930 bp upstream