About   Help   FAQ
rs226778652 SNP Detail
Summary
  • ID
    rs226778652
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:98181013 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAGTAGTGG AGGAGATAAA
    GCCAGGTAAC TTGTAAGCAT TGTGCAATGT GTACATTAAT ATGTACAATT TTATGGTTAC
    GTATGACTCA AAGAACAAAC TGAATCACAA TAAGACTTCA TCCGGCGGTG AGCTCATCAG
    ATCTTGCCAA AATCCTACAG GGGCTGAAGT TTGTGTGCAA ATTTCTCCTT ACTGATTCTG
    Y
    TCTCTTCCCC ATTTCTCCCT CCCCTCTCTT CTCCACCACT TCCACCTGTG ACTTCCCCTT
    TTGCTTTGTC AACAACGTAG CTTTTAGAGC TTTCAACGTC ACTGATGCAC ACAGTGACTG
    AGAGGAGGCA GCCCCTCCTC CTTCACAAGT CACTGTAACA AGTCAATGCT TTATGATAGG
    AAGTTCCTGT GATGCTTACA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365959518 MGP_WTSI_5_98462173 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226778652 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss365959518 MGP_WTSI_5_98462173 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:98181013 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi16083 CpG island 16083 1594 bp distal
Gm42759 predicted gene 42759 1517 bp downstream
Rr615103 regulatory region 615103 1621 bp distal
Rr615104 regulatory region 615104 within coordinates
Tssr47436 transcription start site region 47436 1865 bp downstream
Tssr47437 transcription start site region 47437 1844 bp downstream
Tssr47438 transcription start site region 47438 146 bp upstream
Tssr51995 transcription start site region 51995 1900 bp upstream
Tssr51996 transcription start site region 51996 1838 bp upstream
Tssr51997 transcription start site region 51997 1807 bp upstream
Tssr51998 transcription start site region 51998 1766 bp upstream
Tssr51999 transcription start site region 51999 1733 bp upstream
Tssr52000 transcription start site region 52000 1705 bp upstream
Tssr52001 transcription start site region 52001 1691 bp upstream
Tssr52002 transcription start site region 52002 1667 bp upstream
Tssr52003 transcription start site region 52003 1631 bp upstream
Tssr52004 transcription start site region 52004 1916 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory